DRX005728
6 1 IgG (WT mouse)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic kidney
NA
NA

Attributes by original data submitter

Sample

sample_name
DRS005856
sample comment
The embryonic kidneys (at E16.5) of the wild type mouse were fixed for 30min, sonicated, and mixed with anti-rabbit IgG (Invitrogen) at 4C overnight, followed by precipitation by using Dynabeads M-280 conjugated with anti-rabbit IgG (Invitrogen).

Sequenced DNA Library

library_name
6_1_IgG (WT mouse)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
18510958
Reads aligned (%)
28.5
Duplicates removed (%)
25.8
Number of peaks
1076 (qval < 1E-05)

mm9

Number of total reads
18510958
Reads aligned (%)
28.5
Duplicates removed (%)
26.2
Number of peaks
1087 (qval < 1E-05)

Base call quality data from DBCLS SRA