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For mm10
BigWig (Methylation rate)
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For mm9
BigWig (Methylation rate)
BigWig (Coverage)
Hypo MR
Partial MR
Hyper MR
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig (Methylation rate)
BigWig (Coverage)
Hypo MR
Partial MR
Hyper MR
For mm9
BigWig (Methylation rate)
BigWig (Coverage)
Hypo MR
Partial MR
Hyper MR
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Bisulfite-Seq
wikigenes
PDBj
CellType: Germinal vesicle oocytes
ATCC
MeSH
RIKEN BRC
DRX001589
Dnmt1-deficient GV oocyte - 2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq
Cell type
Cell type Class
Gonad
Cell type
Germinal vesicle oocytes
NA
NA
Attributes by original data submitter
Sample
sample_name
DRS001542
strain
hybrid genetic background (129SvJaeÃÂC57BL/6N)
age
8- weeks
sex
female
sample comment
Fully grown germinal vesicle (GV) stage oocytes were collected from ovarian follicles of over 8-week-old [Dnmt1ãÂÂ2lox/2lox, Zp3-Cre] female mice (Kyushu University)
Sequenced DNA Library
library_name
Dnmt1_KO_FGO2
library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
433211058
Reads aligned (%)
89.2
Coverage rate (×)
5.6
Number of hyper MRs
118345 (qval < 1E-05)
mm9
Number of total reads
433211058
Reads aligned (%)
90.0
Coverage rate (×)
5.7
Number of hyper MRs
118049 (qval < 1E-05)
Base call quality data from
DBCLS SRA