Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Gonad
Cell type
Germinal vesicle oocytes
NA
NA

Attributes by original data submitter

Sample

sample_name
DRS001542
strain
hybrid genetic background (129SvJae×C57BL/6N)
age
8- weeks
sex
female
sample comment
Fully grown germinal vesicle (GV) stage oocytes were collected from ovarian follicles of over 8-week-old [Dnmt1 2lox/2lox, Zp3-Cre] female mice (Kyushu University)

Sequenced DNA Library

library_name
Dnmt1_KO_FGO2
library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
433211058
Reads aligned (%)
89.2
Coverage rate (×)
5.6
Number of hyper MRs
118345 (qval < 1E-05)

mm9

Number of total reads
433211058
Reads aligned (%)
90.0
Coverage rate (×)
5.7
Number of hyper MRs
118049 (qval < 1E-05)

Base call quality data from DBCLS SRA