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For mm10
BigWig (Methylation rate)
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For mm9
BigWig (Methylation rate)
BigWig (Coverage)
Hypo MR
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Hyper MR
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
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For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig (Methylation rate)
BigWig (Coverage)
Hypo MR
Partial MR
Hyper MR
For mm9
BigWig (Methylation rate)
BigWig (Coverage)
Hypo MR
Partial MR
Hyper MR
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Bisulfite-Seq
wikigenes
PDBj
CellType: Germinal vesicle oocytes
ATCC
MeSH
RIKEN BRC
DRX001139
Wild-type GV oocyte (MethylC-seq) -sequencing2-1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq
Cell type
Cell type Class
Gonad
Cell type
Germinal vesicle oocytes
NA
NA
Attributes by original data submitter
Sample
sample_name
DRS001149
age
7 to 8 weeks
sex
female
sample comment
Fully grown germinal vesicle (GV) stage oocytes were collected from ovarian follicles of 7- to 8-week-old female C57BL/6N mice (Clea Japan, Tokyo, Japan) by 48-hour after the injection of pregnant mare serum gonadotropin.
Sequenced DNA Library
library_name
100206-4
library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
41933852
Reads aligned (%)
39.4
Coverage rate (×)
0.1
Number of hyper MRs
12255 (qval < 1E-05)
mm9
Number of total reads
41933852
Reads aligned (%)
41.2
Coverage rate (×)
0.1
Number of hyper MRs
12250 (qval < 1E-05)
Base call quality data from
DBCLS SRA