ChIP-Atlas

ChIP-Atlas is an integrative and comprehensive database for visualizing and making use of public ChIP-seq data. ChIP-Atlas covers almost all public ChIP-seq data submitted to the SRA (Sequence Read Archives) in NCBI, DDBJ, or ENA, and is based on over 44,000 experiments.

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The four main features of ChIP-Atlas are:

Peak Browser

graphically visualizes protein binding on given genomic loci with genome browser (IGV).

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Target Genes

predicts target genes bound by given transcription factors.

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Colocalization

predicts partner proteins colocalizing with given transcription factors.

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in silico ChIP

predicts proteins bound to given genomic loci and genes.

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