Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

Alias
E-MTAB-5662:SX2000-input-3
Broker name
ArrayExpress
Description
Protocols: Strains were cultured using standard methods (Brenner, 1974) The experiment was carried out according to Schmidl et al. 2015, Nature. Library preparation was performed using the Illumina Nextera DNA prep kit.
ENA checklist
ERC000011
INSDC center alias
Wellcome Trust/Cancer Research UK Gurdon Institute Department of Genetics, University of Cambridge Wellcome Trust Sanger Institute
INSDC center name
Wellcome Trust/Cancer Research UK Gurdon Institute Department of Genetics, University of Cambridge Wellcome Trust Sanger Institute
INSDC first public
2017-06-29T17:02:36Z
INSDC last update
2017-04-18T17:39:45Z
INSDC status
public
SRA accession
ERS1671248
Sample Name
ERS1671248
Title
SX2000-input-3
genotype
hrde-1
organism
Caenorhabditis elegans

Sequenced DNA Library

library_name
SX2000-input-3_s
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Strains were cultured using standard methods (Brenner, 1974) The experiment was carried out according to Schmidl et al. 2015, Nature. Library preparation was performed using the Illumina Nextera DNA prep kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

ce10

Number of total reads
454553
Reads aligned (%)
51.7
Duplicates removed (%)
8.6
Number of peaks
102 (qval < 1E-05)

ce11

Number of total reads
454553
Reads aligned (%)
51.7
Duplicates removed (%)
8.6
Number of peaks
102 (qval < 1E-05)

Base call quality data from DBCLS SRA