ChIP-Atlas

ChIP-Atlas is an integrative and comprehensive database for visualizing and making use of public ChIP-seq data. ChIP-Atlas covers almost all public ChIP-seq data submitted to the SRA (Sequence Read Archives) in NCBI, DDBJ, or ENA, and is based on over 144,000 experiments.

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What's new

  • Upcoming maintenance: ChIP-Atlas will be unavailable during 19-22 February, 2021 (JST, UTC+9) due to the building maintenance blackout.
  • Updated site design: (2021/01/04)
    • Dataset search is available as a standalone function
    • ID search at the top right corner now accepts GEO Sample ID (e.g. GSM469863) along with SRA Experiment ID (e.g. SRX018625)
    • New information layout for individual experiment list
  • Added new genome assemblies: hg38, mm10, dm6, ce11. Happy holidays! (2020/12/01)

Peak Browser

Visualizes protein binding on given genomic loci with IGV genome browser

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Target Genes

Predict target genes bound by given transcription factors

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Colocalization

Predict partner proteins colocalizing with given transcription factors

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Enrichment Analysis

Predict proteins bound to given genomic loci and genes

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Dataset Search

Search for data by keywords