Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Neural
Cell type
Thalamic Nuclei
MeSH Description
Several groups of nuclei in the thalamus that serve as the major relay centers for sensory impulses in the brain.

Attributes by original data submitter

Sample

source_name
Human female thalamic nuclei tissue
tissue
Thalamic nuclei
gender
female
age
59
Cause of death
Uremic coma, brain tumor
postmortem delay
7.0 hrs
experiment type
ChIP-Seq
chip antibody
H3K27ac (Abcam, ab4729)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Crosslink, Lyse and Immunoprecipitate Illumina Truseq DNA library protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
27666793
Reads aligned (%)
98.8
Duplicates removed (%)
4.6
Number of peaks
28506 (qval < 1E-05)

hg19

Number of total reads
27666793
Reads aligned (%)
98.6
Duplicates removed (%)
4.6
Number of peaks
28434 (qval < 1E-05)

Base call quality data from DBCLS SRA