Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Gonad
Cell type
Testis
MeSH Description
The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Attributes by original data submitter

Sample

isolate
BL3
age
missing
biomaterial_provider
Dr. Sherman Silber, Infertility Center of St. Louis, St. Luke's Hospital, St. Louis, MO, USA
sex
male
tissue
testis
cell_type
pachytene spermatocyte
phenotype
fertile

Sequenced DNA Library

library_name
human2_PS_K4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
50385056
Reads aligned (%)
97.3
Duplicates removed (%)
37.6
Number of peaks
29647 (qval < 1E-05)

hg19

Number of total reads
50385056
Reads aligned (%)
95.7
Duplicates removed (%)
41.6
Number of peaks
29436 (qval < 1E-05)

Base call quality data from DBCLS SRA