Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
Cell line
cell line
K-562
diagnosis
Leukemia

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. ChIP-seq libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
35055528
Reads aligned (%)
98.3
Duplicates removed (%)
3.6
Number of peaks
42142 (qval < 1E-05)

hg19

Number of total reads
35055528
Reads aligned (%)
98.1
Duplicates removed (%)
3.6
Number of peaks
42002 (qval < 1E-05)

Base call quality data from DBCLS SRA