SRX982097
GSM1652708: GSM1111824 input N2 embryo; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryos
NA
NA

Attributes by original data submitter

Sample

source_name
whole worms
strain
N2
developmental stage
embryo
antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Half of the ChIP DNA and 10-20 ng of input DNA were ligated to Illumina multiplexed adapters and amplified by PCR. Library DNA between 250-500 bp in size was gel purified.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
11412023
Reads aligned (%)
97.3
Duplicates removed (%)
26.2
Number of peaks
526 (qval < 1E-05)

ce10

Number of total reads
11412023
Reads aligned (%)
97.3
Duplicates removed (%)
26.2
Number of peaks
529 (qval < 1E-05)

Base call quality data from DBCLS SRA