Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Acf

Cell type

Cell type Class
Embryo
Cell type
0-12h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
0-12 hour old embryos
developmental stage
0-12 hour old embryos
genotype
acf1-7
strain
Oregon R
chip antibody
ACF1-Rb2
chromatin batch number
5

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

dm3

Number of total reads
23032705
Reads aligned (%)
72.4
Duplicates removed (%)
22.6
Number of peaks
7768 (qval < 1E-05)

dm6

Number of total reads
23032705
Reads aligned (%)
69.7
Duplicates removed (%)
25.2
Number of peaks
7530 (qval < 1E-05)

Base call quality data from DBCLS SRA