Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RELA

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7 cells, IL1b, 45m, p65 ChIP
cell line
MCF7
cell type
breast cancer cell line
treatment
IL1b for 45m
chip antibody
p65 (Vendor: Santa Cruz, cat# sc-372, lot# D0604)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
20903893
Reads aligned (%)
57.2
Duplicates removed (%)
17.6
Number of peaks
7008 (qval < 1E-05)

hg38

Number of total reads
20903893
Reads aligned (%)
57.9
Duplicates removed (%)
17.0
Number of peaks
6969 (qval < 1E-05)

Base call quality data from DBCLS SRA