Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Frontal cortex
NA
NA

Attributes by original data submitter

Sample

source_name
Frontal Cortex
genotype
wild type
strain
C57BL/6
chip antibody
none
age
6 weeks

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
total MeCP2 ChIP was performed as described in Cohen et al. Neuron 2012, Ebert et al Nature 2013 Single-end short read sequencing libraires were prepared using standard protocols, following the manufacturers instructions. Libraries were sequenced on the HiSeq 2500

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
13212224
Reads aligned (%)
97.0
Duplicates removed (%)
12.1
Number of peaks
374 (qval < 1E-05)

mm9

Number of total reads
13212224
Reads aligned (%)
96.8
Duplicates removed (%)
12.2
Number of peaks
399 (qval < 1E-05)

Base call quality data from DBCLS SRA