Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Bone
Cell type
Chondrocytes
MeSH Description
Polymorphic cells that form cartilage.

Attributes by original data submitter

Sample

source_name
chondrocytes
strain
CD1
cell type
chondrocytes
tissue
rib
age
p2.5
treatment
overnight culture
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin Immunoprecipitation was performed using Cell Signaling Technology SimpleChIP Plus Enzymatic Chromatin IP Kit (Magnentic Beads) #9005. For crosslinking, 260 ul formaldehyde 37% solution was added to 10 ml medium of each 10 cm dish, then samples were prepared according to the manufacturer’s instructions. H3K27Me3 antibody (Cell signaling technologies # 9733) was used for the immunoprecipitation. After the procedure chiped DNA was retrieved at a concentration of 7.28ng/ul. As control, the 2% input sample was used. A volume of 10 microlitters of each DNA solution was submitted for chip sequencing to Otogenetics. library construction was performed by otogenetics

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
7954321
Reads aligned (%)
93.2
Duplicates removed (%)
6.5
Number of peaks
96 (qval < 1E-05)

mm9

Number of total reads
7954321
Reads aligned (%)
93.2
Duplicates removed (%)
6.5
Number of peaks
72 (qval < 1E-05)

Base call quality data from DBCLS SRA