Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Bone
Cell type
Chondrocytes
MeSH Description
Polymorphic cells that form cartilage.

Attributes by original data submitter

Sample

source_name
chondrocytes
strain
CD1
cell type
chondrocytes
tissue
rib
age
p2.5
treatment
overnight culture
chip antibody
H3K27Me3 (Cell signaling technologies # 9733)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin Immunoprecipitation was performed using Cell Signaling Technology SimpleChIP Plus Enzymatic Chromatin IP Kit (Magnentic Beads) #9005. For crosslinking, 260 ul formaldehyde 37% solution was added to 10 ml medium of each 10 cm dish, then samples were prepared according to the manufacturer’s instructions. H3K27Me3 antibody (Cell signaling technologies # 9733) was used for the immunoprecipitation. After the procedure chiped DNA was retrieved at a concentration of 7.28ng/ul. As control, the 2% input sample was used. A volume of 10 microlitters of each DNA solution was submitted for chip sequencing to Otogenetics. library construction was performed by otogenetics

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
9556808
Reads aligned (%)
92.2
Duplicates removed (%)
2.1
Number of peaks
73 (qval < 1E-05)

mm9

Number of total reads
9556808
Reads aligned (%)
92.2
Duplicates removed (%)
2.1
Number of peaks
63 (qval < 1E-05)

Base call quality data from DBCLS SRA