Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Others

Cell type

Lenses, Intraocular

MeSH Description

An intraocular lens permanently implanted behind the IRIS and in front of the natural EYE LENS.

Sample

source_name

newborn lens, input

strain/background

CD-1

developmental stage

newborn

age

P1

tissue

lens

chip antibody

none

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChIP-seq: The E12.5 forebrain and newborn (P1) lenses of CD-1 mice (Charles River Laboratories) were dissected, tissue was freshly crosslinked and homogenized. Sonicated lysates were clarified and histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model

Illumina Genome Analyzer IIx

mm10

Number of total reads

20477002

Reads aligned (%)

72.2

Duplicates removed (%)

7.3

Number of peaks

214 (qval < 1E-05)

mm9

Number of total reads

20477002

Reads aligned (%)

72.1

Duplicates removed (%)

7.3

Number of peaks

168 (qval < 1E-05)