Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by original data submitter

Sample

source_name
C2C12 cells
cell line
shNS C2C12
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
chromatin was prepared from formaldedyde cross-linked cells; shearing was done using a probe sonicator. Libraries were prepared by McGill University and Génome Québec Innovation Centre

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
64053261
Reads aligned (%)
83.5
Duplicates removed (%)
12.9
Number of peaks
568 (qval < 1E-05)

mm9

Number of total reads
64053261
Reads aligned (%)
83.3
Duplicates removed (%)
12.8
Number of peaks
630 (qval < 1E-05)

Base call quality data from DBCLS SRA