Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
cell line
J1
strain
129SV
antibody
Normal Mouse IgG (Millipore 12-371)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed as previously described (Lee et al., 2006) by using FLAG antibody (Sigma, F1804) based IP in T10F10 ESCs. 20 µl of 435 ng/µl input and 33.8 ng/µl FLAG-ChIPed DNA were prepared for input and Tex10 ChIP-seq libraries. Massively parallel sequencing was performed with the Illumina HiSeq 2500 according to the manufactory protocol. All libraries were sequenced as 100 bp single-end reads.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
24959320
Reads aligned (%)
97.5
Duplicates removed (%)
18.4
Number of peaks
348 (qval < 1E-05)

mm9

Number of total reads
24959320
Reads aligned (%)
97.4
Duplicates removed (%)
18.5
Number of peaks
301 (qval < 1E-05)

Base call quality data from DBCLS SRA