Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Adult
Cell type
Egg chamber
NA
NA

Attributes by original data submitter

Sample

source_name
OrR stage 13 follicle cell nuclei
strain background
OregonR
genotype/variation
wild type
developmental stage
13
tissue
egg chamber

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Egg chambers were dounced and sonicated using a Bioruptor 300 (Diagenode). Libraries were constructed using the NEB Next ChIP seq kit (Part # E6200S) according to manufactures recommendations with indexing primers for multiplexing.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm6

Number of total reads
19174550
Reads aligned (%)
86.0
Duplicates removed (%)
30.7
Number of peaks
450 (qval < 1E-05)

dm3

Number of total reads
19174550
Reads aligned (%)
86.1
Duplicates removed (%)
30.0
Number of peaks
128 (qval < 1E-05)

Base call quality data from DBCLS SRA