Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rrp6

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
Drosophila S2-RRP6-V5 cells grown in Schneider medium
cell line
S2
chip antibody
Anti-V5 antibody (Abcam; ab9116)
dsrna target
GFP

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Immunoprecipitated DNA was isolated with the ChIP cleanup and concentrator Kit (Zymo Research) DNA libraries were prepared by Zymo Research Epigenetics Services and were sequenced on a HiSeq2500 sequencer

Sequencing Platform

instrument_model
Illumina HiSeq 2500

dm3

Number of total reads
80064150
Reads aligned (%)
19.3
Duplicates removed (%)
62.5
Number of peaks
5719 (qval < 1E-05)

dm6

Number of total reads
80064150
Reads aligned (%)
18.9
Duplicates removed (%)
64.3
Number of peaks
3860 (qval < 1E-05)

Base call quality data from DBCLS SRA