Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rrp6

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
Drosophila S2-RRP6-V5 cells grown in Schneider medium
cell line
S2
dsrna target
Su(var)3-9

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Input DNA was isolated with the ChIP cleanup and concentrator Kit (Zymo Research) DNA libraries were prepared by Zymo Research Epigenetics Services and were sequenced on a HiSeq2500 sequencer

Sequencing Platform

instrument_model
Illumina HiSeq 2500

dm3

Number of total reads
12013127
Reads aligned (%)
85.5
Duplicates removed (%)
8.3
Number of peaks
2688 (qval < 1E-05)

dm6

Number of total reads
12013127
Reads aligned (%)
84.7
Duplicates removed (%)
10.7
Number of peaks
2617 (qval < 1E-05)

Base call quality data from DBCLS SRA