Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM4C

Cell type

Cell type Class
Others
Cell type
OECM-1
NA
NA

Attributes by original data submitter

Sample

source_name
Head and neck cancer cell line OECM1 receving ARID3B-Cas9
cell line
OECM1
cell type
Head and neck cancer cell
chip antibody
KDM4C
chip antibody vendor
NOVUS

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified by the Pierce Magnetic ChIP Kit and histone-DNA complexes were isolated with antibody. 10 ng DNA was end-repaired, A-tailed and adaptor-ligated following the Illumina's TruSeq DNA preparation protocol.

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
18818493
Reads aligned (%)
87.1
Duplicates removed (%)
11.1
Number of peaks
541 (qval < 1E-05)

hg38

Number of total reads
18818493
Reads aligned (%)
89.6
Duplicates removed (%)
9.3
Number of peaks
680 (qval < 1E-05)

Base call quality data from DBCLS SRA