Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM1A

Cell type

Cell type Class
Lung
Cell type
NCI-H526
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Small Cell

Attributes by original data submitter

Sample

source_name
NCI-H526 small cell lung cancer cell line
cell line
NCI-H526
cell type
epithelial
passages
multiple
chip antibody
LSD1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
SDS buffer after crosslinking

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
42370095
Reads aligned (%)
80.0
Duplicates removed (%)
16.4
Number of peaks
17126 (qval < 1E-05)

hg38

Number of total reads
42370095
Reads aligned (%)
81.3
Duplicates removed (%)
15.6
Number of peaks
17347 (qval < 1E-05)

Base call quality data from DBCLS SRA