Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D cells
cell line
ER+ Breast Cancer Cell Line T47D
passages
27-30
treatment
siCont_IL6
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclear lysates were prepared and antibody-bound chromatin was purified using appropriate antibodies. Antibodies used: ERα ab3575 and Merck Millipore 06-935 antibody mix. DNA was prepared for Illumina sequencing on the Novaseq 6000 using the ThruPLEX DNA-seq kit according to the manufacturer's instructions.

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

hg38

Number of total reads
52997630
Reads aligned (%)
99.0
Duplicates removed (%)
10.9
Number of peaks
1539 (qval < 1E-05)

hg19

Number of total reads
52997630
Reads aligned (%)
98.0
Duplicates removed (%)
12.1
Number of peaks
1429 (qval < 1E-05)

Base call quality data from DBCLS SRA