Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2AK119Ub

Cell type

Cell type Class
Blood
Cell type
Acute myeloid leukemia
NA
NA

Attributes by original data submitter

Sample

source_name
AML_2
tissue
AML
antibody target
H2AK119ub
company
Cell Signaling Technology
catalogue number
D27C4
reference genome
HG19

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was sonicated and used for ChIP seq using specific antibodies (avialable on suplementry table). ChIP seq libraries were preapared according to Illumina's standard protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
8898610
Reads aligned (%)
96.2
Duplicates removed (%)
10.0
Number of peaks
56 (qval < 1E-05)

hg19

Number of total reads
8898610
Reads aligned (%)
95.7
Duplicates removed (%)
10.2
Number of peaks
92 (qval < 1E-05)

Base call quality data from DBCLS SRA