Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
Acute myeloid leukemia
NA
NA

Attributes by original data submitter

Sample

source_name
AML_2
tissue
AML
antibody target
H3K4me3
company
Abcam
catalogue number
ab8580
reference genome
HG19

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was sonicated and used for ChIP seq using specific antibodies (avialable on suplementry table). ChIP seq libraries were preapared according to Illumina's standard protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
22836445
Reads aligned (%)
96.0
Duplicates removed (%)
19.6
Number of peaks
24782 (qval < 1E-05)

hg19

Number of total reads
22836445
Reads aligned (%)
94.2
Duplicates removed (%)
22.8
Number of peaks
24751 (qval < 1E-05)

Base call quality data from DBCLS SRA