Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
Acute myeloid leukemia
NA
NA

Attributes by original data submitter

Sample

source_name
AML_3
tissue
AML
antibody target
H3K27me3
company
Millipore
catalogue number
07-449
reference genome
HG19

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was sonicated and used for ChIP seq using specific antibodies (avialable on suplementry table). ChIP seq libraries were preapared according to Illumina's standard protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
8207507
Reads aligned (%)
95.1
Duplicates removed (%)
8.2
Number of peaks
10198 (qval < 1E-05)

hg19

Number of total reads
8207507
Reads aligned (%)
94.1
Duplicates removed (%)
9.9
Number of peaks
10113 (qval < 1E-05)

Base call quality data from DBCLS SRA