Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Epidermis
Cell type
OCM-1
NA
NA

Attributes by original data submitter

Sample

source_name
melanoma cells
cell line
OCM1
cell type
ocular melanoma cells
antibody
CTCF

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
45971453
Reads aligned (%)
150.2
Duplicates removed (%)
13.6
Number of peaks
467 (qval < 1E-05)

hg38

Number of total reads
45971453
Reads aligned (%)
152.4
Duplicates removed (%)
13.3
Number of peaks
1579 (qval < 1E-05)

Base call quality data from DBCLS SRA