Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AGO1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
AGO1 ChIP MCF7 vehicle
cell line
MCF7
source tissue
mammary gland, breast; derived from metastatic site: pleural effusion
treatment
Vehicle (ethanol) 1h
chip antibody
anti AGO1 (clone 4B8, Sigma-Aldrich)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
61697796
Reads aligned (%)
85.1
Duplicates removed (%)
10.9
Number of peaks
1331 (qval < 1E-05)

hg38

Number of total reads
61697796
Reads aligned (%)
87.4
Duplicates removed (%)
9.3
Number of peaks
1595 (qval < 1E-05)

Base call quality data from DBCLS SRA