Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pancreas
Cell type
Pancreas
MeSH Description
A nodular organ in the ABDOMEN that contains a mixture of ENDOCRINE GLANDS and EXOCRINE GLANDS. The small endocrine portion consists of the ISLETS OF LANGERHANS secreting a number of hormones into the blood stream. The large exocrine portion (EXOCRINE PANCREAS) is a compound acinar gland that secretes several digestive enzymes into the pancreatic ductal system that empties into the DUODENUM.

Attributes by original data submitter

Sample

source_name
pancreas, juvenile, H3K4me3 ChIP
cell type
endocrine
age
juvenile
chip antibody
rabbit H3K4me3 (Abcam, ab8580)
tissue
pancreas

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera Tagmentation (Buenrostro et al 2013. PMID:24097267) Illumina HiSeq/TruSeq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
42761457
Reads aligned (%)
96.8
Duplicates removed (%)
56.9
Number of peaks
23545 (qval < 1E-05)

hg19

Number of total reads
42761457
Reads aligned (%)
95.6
Duplicates removed (%)
59.0
Number of peaks
23025 (qval < 1E-05)

Base call quality data from DBCLS SRA