Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Bone marrow mononuclear cells
NA
NA

Attributes by original data submitter

Sample

source_name
Bone marrow mononuclear cells
diagnosis
Acute myeloid leukemia (AML)
patient
REB20
cell type
Bone marrow mononuclear cells
treatment
DMSO
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq libraries were prepared using SMARTer ThruPLEX DNA-seq kit (Takara Bio USA, Mountain View, CA) according to the manufacturer's instructions. 1 to 2 ng fragmented double stranded DNAs were used to construct libraries with dual indices.

Sequencing Platform

instrument_model
Illumina HiSeq 1500

hg38

Number of total reads
18827854
Reads aligned (%)
93.6
Duplicates removed (%)
15.9
Number of peaks
28188 (qval < 1E-05)

hg19

Number of total reads
18827854
Reads aligned (%)
92.5
Duplicates removed (%)
17.3
Number of peaks
28315 (qval < 1E-05)

Base call quality data from DBCLS SRA