Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Bone marrow mononuclear cells
NA
NA

Attributes by original data submitter

Sample

source_name
Bone marrow mononuclear cells
diagnosis
Acute myeloid leukemia (AML)
patient
GMW2
cell type
Bone marrow mononuclear cells
treatment
DMSO
chip antibody
None

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
20911741
Reads aligned (%)
93.5
Duplicates removed (%)
10.3
Number of peaks
31215 (qval < 1E-05)

hg19

Number of total reads
20911741
Reads aligned (%)
91.7
Duplicates removed (%)
12.8
Number of peaks
33050 (qval < 1E-05)

Base call quality data from DBCLS SRA