SRX856960
GSM1594061: ISC Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Intestinal stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
IntestineStemCells
background strain
C57BL/6
strain
Lgr5Gfp-CreERT2
genotype/variation
WT
chip antibody
input
cell type
Intestine Stem Cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit (Part# 0801-0303).

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
91211873
Reads aligned (%)
92.2
Duplicates removed (%)
15.9
Number of peaks
817 (qval < 1E-05)

mm9

Number of total reads
91211873
Reads aligned (%)
91.9
Duplicates removed (%)
15.8
Number of peaks
901 (qval < 1E-05)

Base call quality data from DBCLS SRA