SRX856957
GSM1594058: Crypt Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Intestinal crypt
NA
NA

Attributes by original data submitter

Sample

source_name
Crypt
background strain
C57BL/6
strain
Lgr5Gfp-CreERT2
genotype/variation
WT
chip antibody
input
cell type
Crypt cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit (Part# 0801-0303).

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
41562279
Reads aligned (%)
97.2
Duplicates removed (%)
16.2
Number of peaks
500 (qval < 1E-05)

mm9

Number of total reads
41562279
Reads aligned (%)
96.9
Duplicates removed (%)
16.1
Number of peaks
602 (qval < 1E-05)

Base call quality data from DBCLS SRA