Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RUNX1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7 cells
chip antibody
RUNX1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to Illumina protocols for DNA samples

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
35528352
Reads aligned (%)
59.1
Duplicates removed (%)
39.2
Number of peaks
959 (qval < 1E-05)

hg38

Number of total reads
35528352
Reads aligned (%)
61.0
Duplicates removed (%)
37.7
Number of peaks
641 (qval < 1E-05)

Base call quality data from DBCLS SRA