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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27ac
wikigenes
PDBj
CellType: CD4+ T cells
ATCC
MeSH
RIKEN BRC
SRX842731
GSM1585340: WT H3K27me3 2; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27ac
Cell type
Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA
Attributes by original data submitter
Sample
source_name
CD4+CXCR5+CD62Llo T cells
strain
C57BL/6
genotype/variation
Utx fl/fl
Stage
Day 21 post infection
tissue
Spleen
cell type
CD4+CXCR5+CD62Llo T cells
chip antibody
Abcam ab6002 anti-H3K27me3
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed for Chromatin Imunoprecipitation. DNA was end repaired, A-tailed, then Illumina barcode adaptors were ligated and amplified.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
23876179
Reads aligned (%)
97.3
Duplicates removed (%)
92.5
Number of peaks
97 (qval < 1E-05)
mm9
Number of total reads
23876179
Reads aligned (%)
97.1
Duplicates removed (%)
92.6
Number of peaks
111 (qval < 1E-05)
Base call quality data from
DBCLS SRA