SRX842730
GSM1585339: WT H3K27me3 1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+CXCR5+CD62Llo T cells
strain
C57BL/6
genotype/variation
Utx fl/fl
Stage
Day 21 post infection
tissue
Spleen
cell type
CD4+CXCR5+CD62Llo T cells
chip antibody
Abcam ab6002 anti-H3K27me3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed for Chromatin Imunoprecipitation. DNA was end repaired, A-tailed, then Illumina barcode adaptors were ligated and amplified.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
25585180
Reads aligned (%)
95.9
Duplicates removed (%)
89.3
Number of peaks
130 (qval < 1E-05)

mm9

Number of total reads
25585180
Reads aligned (%)
95.7
Duplicates removed (%)
89.5
Number of peaks
146 (qval < 1E-05)

Base call quality data from DBCLS SRA