SRX8392432
GSM4567341: HDA-1 ChIP (dve-1+atp-2) rep3; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
hda-1

Cell type

Cell type Class
Adult
Cell type
Adult body
NA
NA

Attributes by original data submitter

Sample

source_name
HDA-1_ChIP (dve-1+atp-2)
strain
hda-1p::hda-1::gfp; glp-4(bn2)
developmental stage
Day1 of adulthood
chip antibody
GFP agarose (ChromoTek, gta-20)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Worms were cross-linked by formaldehyde and homogenized by a glass homogenizer.Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Libraries were prepared by DNA Sample Kit (NEB, E7370).

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
7913909
Reads aligned (%)
70.3
Duplicates removed (%)
20.3
Number of peaks
5916 (qval < 1E-05)

ce10

Number of total reads
7913909
Reads aligned (%)
70.3
Duplicates removed (%)
20.3
Number of peaks
5917 (qval < 1E-05)

Base call quality data from DBCLS SRA