Antigen

Antigen Class

TFs and others

Antigen

hda-1

Cell type

Cell type Class

Adult

Cell type

Adult body

NA

NA

Sample

source_name

HDA-1_ChIP (dve-1)

strain

hda-1p::hda-1::gfp; glp-4(bn2)

developmental stage

Day1 of adulthood

chip antibody

GFP agarose (ChromoTek, gta-20)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Worms were cross-linked by formaldehyde and homogenized by a glass homogenizer.Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Libraries were prepared by DNA Sample Kit (NEB, E7370).

Sequencing Platform

instrument_model

HiSeq X Ten

ce11

Number of total reads

7324400

Reads aligned (%)

73.3

Duplicates removed (%)

22.3

Number of peaks

6112 (qval < 1E-05)

ce10

Number of total reads

7324400

Reads aligned (%)

73.3

Duplicates removed (%)

22.3

Number of peaks

6111 (qval < 1E-05)