Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TCF21

Cell type

Cell type Class
Cardiovascular
Cell type
HCASMC
NA
NA

Attributes by original data submitter

Sample

source_name
HCASMC_TCF21 ChIP-Seq
cell line
Human Coronary Artery Smooth Muscle Cells (HCASMC)
tissue
coronary artery
genotype/treatment
no dioxin
chip antibody
TCF21 antibody (Sigma HPA013189)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq was performed using TCF21 antibody (Sigma HPA013189) in HCASMC between passages 5-8, and library was constructed using the KAPA Hyper Prep Kit.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg19

Number of total reads
31814478
Reads aligned (%)
135.0
Duplicates removed (%)
9.6
Number of peaks
16362 (qval < 1E-05)

hg38

Number of total reads
31814478
Reads aligned (%)
138.5
Duplicates removed (%)
9.1
Number of peaks
17323 (qval < 1E-05)

Base call quality data from DBCLS SRA