Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
HCASMC
NA
NA

Attributes by original data submitter

Sample

source_name
HCASMC_Input ChIP-Seq (for TCF21 ChIP)
cell line
Human Coronary Artery Smooth Muscle Cells (HCASMC)
tissue
coronary artery
genotype/treatment
no dioxin

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
9883773
Reads aligned (%)
64.5
Duplicates removed (%)
4.4
Number of peaks
769 (qval < 1E-05)

hg19

Number of total reads
9883773
Reads aligned (%)
62.6
Duplicates removed (%)
5.2
Number of peaks
273 (qval < 1E-05)

Base call quality data from DBCLS SRA