SRX8346157
VDR ChIP-seq in human monocytic THP-1 cell line treated with 100 nM calcitriol (D3) (1hr, rep2)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

isolate
an acute monocytic leukemia patient
age
1 year-old
biomaterial_provider
Keiya Tada lab (1980)
sex
male
tissue
peripherial blood
cell_line
THP-1

Sequenced DNA Library

library_name
hs_THP1_VDR_D3_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22112791
Reads aligned (%)
98.7
Duplicates removed (%)
4.6
Number of peaks
5433 (qval < 1E-05)

hg19

Number of total reads
22112791
Reads aligned (%)
98.0
Duplicates removed (%)
5.4
Number of peaks
5432 (qval < 1E-05)

Base call quality data from DBCLS SRA