Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27ac
wikigenes
PDBj
CellType: SUP-T1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX8336400
GSM4551179: Chip-seq SupT1/WT H3K27Ac rep2; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27ac
Cell type
Cell type Class
Blood
Cell type
SUP-T1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia
Attributes by original data submitter
Sample
source_name
SupT1 cell line: Human T cell lymphoblastic Lymphoma
cell line
SupT1
cell type
T lymphoblast
pre-treatment
None
antibody
H3K27ac (ab4729, Abcam).
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Magna ChIP™ A/G Chromatin Immunoprecipitation Kit (Merck Millipore).
Sequencing Platform
instrument_model
Illumina MiSeq
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
36852387
Reads aligned (%)
63.5
Duplicates removed (%)
6.6
Number of peaks
17463 (qval < 1E-05)
hg19
Number of total reads
36852387
Reads aligned (%)
62.1
Duplicates removed (%)
9.8
Number of peaks
17286 (qval < 1E-05)
Base call quality data from
DBCLS SRA