SRX8336398
GSM4551177: Chip-seq SupT1/WT H3K36me3 rep2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Blood
Cell type
SUP-T1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
SupT1 cell line: Human T cell lymphoblastic Lymphoma
cell line
SupT1
cell type
T lymphoblast
pre-treatment
None
antibody
H3K36me3 (ab9050, Abcam)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Magna ChIP™ A/G Chromatin Immunoprecipitation Kit (Merck Millipore).

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26224595
Reads aligned (%)
54.7
Duplicates removed (%)
5.2
Number of peaks
814 (qval < 1E-05)

hg19

Number of total reads
26224595
Reads aligned (%)
53.9
Duplicates removed (%)
6.1
Number of peaks
709 (qval < 1E-05)

Base call quality data from DBCLS SRA