Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BAP1

Cell type

Cell type Class
Lung
Cell type
NCI-H1963
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Small Cell

Attributes by original data submitter

Sample

source_name
small cell lung cancer
cell line
NCI-H1963
tissue
small cell lung cancer
passages
Low passages (6-10)
treatment
ASXL3 shRNA
antibody
anti-BAP1

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
35365629
Reads aligned (%)
81.3
Duplicates removed (%)
16.3
Number of peaks
925 (qval < 1E-05)

hg38

Number of total reads
35365629
Reads aligned (%)
82.7
Duplicates removed (%)
15.7
Number of peaks
1240 (qval < 1E-05)

Base call quality data from DBCLS SRA