Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Nlrp3

Cell type

Cell type Class
Blood
Cell type
Naive T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Naive T cells from spleen and nodes
strain
C57/Bl6j
age
7 weeks
genotype/variation
NLRP3 KO
cell type
CD4 T cells
chip antibody
anti-NLRP3 (Adipogen, catalog# AG-20B-0014, lot# A22141102)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
2066852
Reads aligned (%)
75.4
Duplicates removed (%)
19.8
Number of peaks
53 (qval < 1E-05)

mm9

Number of total reads
2066852
Reads aligned (%)
75.1
Duplicates removed (%)
21.2
Number of peaks
49 (qval < 1E-05)

Base call quality data from DBCLS SRA