Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EZH2

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Colon cancer cells
cell line
HCT116
chip antibody
EZH2 (Abcam, ab3748)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries of ChIP samples were prepared according to a modified version of the Illumina Genomic DNA protocol, as described previously (Mikkelsen et al., 2007).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
25002010
Reads aligned (%)
60.8
Duplicates removed (%)
27.6
Number of peaks
734 (qval < 1E-05)

hg38

Number of total reads
25002010
Reads aligned (%)
62.5
Duplicates removed (%)
26.3
Number of peaks
637 (qval < 1E-05)

Base call quality data from DBCLS SRA