Curated Sample Data


Genome
hg19
Antigen Class
TFs and others
Antigen
EZH2
Cell type Class
Digestive tract
Cell type
HCT 116

Cell type information


Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by Original Data Submitter


source_name
Colon cancer cells
cell line
HCT116
chip antibody
EZH2 (Abcam, ab3748)

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries of ChIP samples were prepared according to a modified version of the Illumina Genomic DNA protocol, as described previously (Mikkelsen et al., 2007).

Platform Information


instrument_model
Illumina HiSeq 2000

External Database Query

Logs in read processing pipeline


Number of total reads
25002010
Reads aligned (%)
84.0
Duplicates removed (%)
27.6
Number of peaks
734 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA