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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: MCF 10A
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX825301
ChIP-seq INPUT tamoxifen 36 hr MCF10A-ER-Src
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease
Attributes by original data submitter
Sample
isolate
MCF10A-Er-Src
age
not collected
biomaterial_provider
Kevin Struhl
sex
female
tissue
breast
cell_line
MCF10A
cell_subtype
MCF10A-Er-Src
cell_type
Epithelial
treatment
4-hydroxytamoxifen 36hrs
Sequenced DNA Library
library_name
INPUT_TAM_36hr
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
31338048
Reads aligned (%)
99.1
Duplicates removed (%)
5.0
Number of peaks
800 (qval < 1E-05)
hg19
Number of total reads
31338048
Reads aligned (%)
98.0
Duplicates removed (%)
6.1
Number of peaks
1012 (qval < 1E-05)
Base call quality data from
DBCLS SRA