Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease

Attributes by original data submitter

Sample

isolate
MCF10A-Er-Src
age
not collected
biomaterial_provider
Kevin Struhl
sex
female
tissue
breast
cell_line
MCF10A
cell_subtype
MCF10A-Er-Src
cell_type
Epithelial
treatment
4-hydroxytamoxifen 36hrs

Sequenced DNA Library

library_name
STAT3_TAM_36hr
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
48016759
Reads aligned (%)
95.4
Duplicates removed (%)
30.6
Number of peaks
54061 (qval < 1E-05)

hg19

Number of total reads
48016759
Reads aligned (%)
94.6
Duplicates removed (%)
31.7
Number of peaks
53964 (qval < 1E-05)

Base call quality data from DBCLS SRA