Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease

Attributes by original data submitter

Sample

isolate
MCF10A-Er-Src
age
not collected
biomaterial_provider
Kevin Struhl
sex
female
tissue
breast
cell_line
MCF10A
cell_subtype
MCF10A-Er-Src
cell_type
Epithelial
treatment
4-hydroxytamoxifen 04hrs

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
39551495
Reads aligned (%)
86.5
Duplicates removed (%)
67.8
Number of peaks
1712 (qval < 1E-05)

hg19

Number of total reads
39551495
Reads aligned (%)
85.7
Duplicates removed (%)
69.1
Number of peaks
1722 (qval < 1E-05)

Base call quality data from DBCLS SRA